IL_9SRE_066

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GUAG*CGAUC

Length

9 nucleotides

Bulged bases

9SRE|1|1|U|1862

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRE_066 not in the Motif Atlas

Geometric match to IL_2ZY6_001

Geometric discrepancy: 0.133

The information below is about IL_2ZY6_001

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9SRE|1|1|G|1674
9SRE|1|1|U|1675
9SRE|1|1|A|1676
9SRE|1|1|G|1677
*
9SRE|1|1|C|1859
9SRE|1|1|G|1860
9SRE|1|1|A|1861
9SRE|1|1|U|1862
9SRE|1|1|C|1863

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain B5

Large ribosomal subunit protein eL14

Chain Bd

Large ribosomal subunit protein eL34