IL_9SRE_070
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- GGGAGUG*CGAGAAC
- Length
- 14 nucleotides
- Bulged bases
- 9SRE|1|1|U|1762, 9SRE|1|1|A|1775
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRE_070 not in the Motif Atlas
- Geometric match to IL_9E6Q_060
- Geometric discrepancy: 0.0886
- The information below is about IL_9E6Q_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.3
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 7
Unit IDs
9SRE|1|1|G|1757
9SRE|1|1|G|1758
9SRE|1|1|G|1759
9SRE|1|1|A|1760
9SRE|1|1|G|1761
9SRE|1|1|U|1762
9SRE|1|1|G|1763
*
9SRE|1|1|C|1773
9SRE|1|1|G|1774
9SRE|1|1|A|1775
9SRE|1|1|G|1776
9SRE|1|1|A|1777
9SRE|1|1|A|1778
9SRE|1|1|C|1779
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain AQ
- 30S ribosomal protein S15
- Chain B5
- Large ribosomal subunit protein eL14
- Chain BQ
- Large ribosomal subunit protein eL19
- Chain BZ
- Large ribosomal subunit protein eL30
- Chain Bd
- Large ribosomal subunit protein eL34
- Chain Bi
- Large ribosomal subunit protein eL43
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