IL_9SRE_088

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9SRE|1|1|A|2671, 9SRE|1|1|C|2672

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRE_088 not in the Motif Atlas

Homologous match to IL_4V9F_075

Geometric discrepancy: 0.257

The information below is about IL_4V9F_075

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_98469.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

37

Unit IDs

9SRE|1|1|G|2310
9SRE|1|1|A|2311
*
9SRE|1|1|U|2670
9SRE|1|1|A|2671
9SRE|1|1|C|2672
9SRE|1|1|C|2673

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BB

Large ribosomal subunit protein uL2

Chain BD

Large ribosomal subunit protein uL4

Chain H

Dehydrogenase