IL_9SRE_173

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CUC*GG

Length

5 nucleotides

Bulged bases

9SRE|1|3|U|88

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRE_173 not in the Motif Atlas

Homologous match to IL_4V9F_107

Geometric discrepancy: 0.1913

The information below is about IL_4V9F_107

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9SRE|1|3|C|87
9SRE|1|3|U|88
9SRE|1|3|C|89
*
9SRE|1|3|G|96
9SRE|1|3|G|97

Current chains

Chain 3

rRNA 5S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain BN

Large ribosomal subunit protein uL16

Chain BY

Large ribosomal subunit protein uL30

Chain Bl

Large ribosomal subunit protein eL20