IL_9SRO_040
3D structure
- PDB id
- 9SRO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 9SRO|1|A|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRO_040 not in the Motif Atlas
- Homologous match to IL_6CZR_410
- Geometric discrepancy: 0.1625
- The information below is about IL_6CZR_410
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.2
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
9SRO|1|A|G|933
9SRO|1|A|C|934
9SRO|1|A|A|935
*
9SRO|1|A|U|1380
9SRO|1|A|U|1381
9SRO|1|A|C|1382
9SRO|1|A|C|1383
9SRO|1|A|C|1384
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
- Chain X
- ermBL mRNA transcript
- Chain Z
- Transfer RNA; tRNA
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