IL_9SRO_041
3D structure
- PDB id
- 9SRO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGG*CACA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRO_041 not in the Motif Atlas
- Geometric match to IL_3MXH_001
- Geometric discrepancy: 0.3282
- The information below is about IL_3MXH_001
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_82096.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
9SRO|1|A|U|952
9SRO|1|A|G|953
9SRO|1|A|G|954
*
9SRO|1|A|C|1226
9SRO|1|A|A|1227
9SRO|1|A|C|1228
9SRO|1|A|A|1229
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain M
- Small ribosomal subunit protein uS13
- Chain S
- Small ribosomal subunit protein uS19
- Chain Y
- Transfer RNA; tRNA
- Chain Z
- Transfer RNA; tRNA
Coloring options: