IL_9SRO_047

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

9SRO|1|A|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRO_047 not in the Motif Atlas

Homologous match to IL_6CZR_156

Geometric discrepancy: 0.2366

The information below is about IL_6CZR_156

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9SRO|1|A|U|1060
9SRO|1|A|G|1061
*
9SRO|1|A|C|1195
9SRO|1|A|A|1196
9SRO|1|A|A|1197

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain E

Small ribosomal subunit protein uS5

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14

Chain X

ermBL mRNA transcript

Chain Y

Transfer RNA; tRNA