IL_9SRO_117

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

9SRO|1|a|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRO_117 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.1486

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9SRO|1|a|C|1437
9SRO|1|a|U|1438
9SRO|1|a|A|1439
9SRO|1|a|U|1440
*
9SRO|1|a|A|1551
9SRO|1|a|A|1552
9SRO|1|a|A|1553
9SRO|1|a|U|1554
9SRO|1|a|G|1555

Current chains

Chain a

23S rRNA

Nearby chains