IL_9SS0_009

3D structure

PDB id

9SS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAA*UGC

Length

7 nucleotides

Bulged bases

9SS0|1|D1|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS0_009 not in the Motif Atlas

Geometric match to IL_8B0X_009

Geometric discrepancy: 0.0689

The information below is about IL_8B0X_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76400.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

9SS0|1|D1|G|128
9SS0|1|D1|A|129
9SS0|1|D1|A|130
9SS0|1|D1|A|131
*
9SS0|1|D1|U|231
9SS0|1|D1|G|232
9SS0|1|D1|C|233

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AO

Small ribosomal subunit protein bS16

Chain AP

Small ribosomal subunit protein uS17

Chain AS

Small ribosomal subunit protein bS20