IL_9SS0_052

3D structure

PDB id

9SS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS0_052 not in the Motif Atlas

Homologous match to IL_6CZR_368

Geometric discrepancy: 0.3259

The information below is about IL_6CZR_368

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.3

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9SS0|1|D1|G|1401
9SS0|1|D1|C|1402
9SS0|1|D1|C|1403
9SS0|1|D1|C|1404
*
9SS0|1|D1|G|1497
9SS0|1|D1|U|1498
9SS0|1|D1|A|1499
9SS0|1|D1|A|1500
9SS0|1|D1|C|1501

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain F3

Translation initiation factor IF-3