IL_9SS1_021

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS1_021 not in the Motif Atlas

Geometric match to IL_8B0X_020

Geometric discrepancy: 0.1088

The information below is about IL_8B0X_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02111.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9SS1|1|D1|C|440
9SS1|1|D1|A|441
9SS1|1|D1|G|442
*
9SS1|1|D1|C|492
9SS1|1|D1|A|493
9SS1|1|D1|G|494
9SS1|1|D1|A|495
9SS1|1|D1|A|496
9SS1|1|D1|G|497

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS4