IL_9SS1_024

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS1_024 not in the Motif Atlas

Homologous match to IL_6CZR_132

Geometric discrepancy: 0.151

The information below is about IL_6CZR_132

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9SS1|1|D1|C|504
9SS1|1|D1|G|505
9SS1|1|D1|G|506
9SS1|1|D1|C|507
9SS1|1|D1|U|508
9SS1|1|D1|A|509
9SS1|1|D1|A|510
9SS1|1|D1|C|511
*
9SS1|1|D1|G|540
9SS1|1|D1|G|541

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS4

Chain AK

Small ribosomal subunit protein uS12