IL_9SS1_025

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

9SS1|1|D1|A|532, 9SS1|1|D1|U|534, 9SS1|1|D1|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS1_025 not in the Motif Atlas

Homologous match to IL_6CZR_133

Geometric discrepancy: 0.2986

The information below is about IL_6CZR_133

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9SS1|1|D1|G|515
9SS1|1|D1|U|516
9SS1|1|D1|G|517
9SS1|1|D1|C|518
9SS1|1|D1|C|519
9SS1|1|D1|A|520
9SS1|1|D1|G|521
*
9SS1|1|D1|C|528
9SS1|1|D1|G|529
9SS1|1|D1|G|530
9SS1|1|D1|U|531
9SS1|1|D1|A|532
9SS1|1|D1|A|533
9SS1|1|D1|U|534
9SS1|1|D1|A|535
9SS1|1|D1|C|536

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS4

Chain AK

Small ribosomal subunit protein uS12

Chain F1

Translation initiation factor IF-1