IL_9SS1_026

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9SS1|1|D1|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS1_026 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1234

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9SS1|1|D1|C|569
9SS1|1|D1|G|570
9SS1|1|D1|U|571
9SS1|1|D1|A|572
9SS1|1|D1|A|573
9SS1|1|D1|A|574
9SS1|1|D1|G|575
*
9SS1|1|D1|C|880
9SS1|1|D1|G|881

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AK

Small ribosomal subunit protein uS12

Chain AP

Small ribosomal subunit protein uS17