IL_9SS1_030
3D structure
- PDB id
- 9SS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAAAUCC*GAACUG
- Length
- 14 nucleotides
- Bulged bases
- 9SS1|1|D1|U|632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS1_030 not in the Motif Atlas
- Homologous match to IL_6CZR_408
- Geometric discrepancy: 0.5403
- The information below is about IL_6CZR_408
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
9SS1|1|D1|U|605
9SS1|1|D1|G|606
9SS1|1|D1|A|607
9SS1|1|D1|A|608
9SS1|1|D1|A|609
9SS1|1|D1|U|610
9SS1|1|D1|C|611
9SS1|1|D1|C|612
*
9SS1|1|D1|G|628
9SS1|1|D1|A|629
9SS1|1|D1|A|630
9SS1|1|D1|C|631
9SS1|1|D1|U|632
9SS1|1|D1|G|633
Current chains
- Chain D1
- 16S Ribosomal RNA
Nearby chains
- Chain AC
- Small ribosomal subunit protein uS4
- Chain AG
- Small ribosomal subunit protein uS8
- Chain AO
- Small ribosomal subunit protein bS16
- Chain AP
- Small ribosomal subunit protein uS17
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