IL_9SS1_036

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS1_036 not in the Motif Atlas

Homologous match to IL_6CZR_144

Geometric discrepancy: 0.1586

The information below is about IL_6CZR_144

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

9SS1|1|D1|G|774
9SS1|1|D1|G|775
9SS1|1|D1|G|776
9SS1|1|D1|A|777
9SS1|1|D1|G|778
*
9SS1|1|D1|U|804
9SS1|1|D1|C|805

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AJ

Small ribosomal subunit protein uS11