IL_9SS1_038

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS1_038 not in the Motif Atlas

Homologous match to IL_6CZR_364

Geometric discrepancy: 0.1295

The information below is about IL_6CZR_364

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

9SS1|1|D1|G|887
9SS1|1|D1|G|888
9SS1|1|D1|A|889
9SS1|1|D1|G|890
9SS1|1|D1|U|891
9SS1|1|D1|A|892
9SS1|1|D1|C|893
9SS1|1|D1|G|894
*
9SS1|1|D1|U|905
9SS1|1|D1|A|906
9SS1|1|D1|A|907
9SS1|1|D1|A|908
9SS1|1|D1|A|909
9SS1|1|D1|C|910

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AK

Small ribosomal subunit protein uS12