IL_9SS1_054

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS1_054 not in the Motif Atlas

Geometric match to IL_1U9S_007

Geometric discrepancy: 0.1453

The information below is about IL_1U9S_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

9SS1|1|D1|G|1405
9SS1|1|D1|U|1406
9SS1|1|D1|C|1407
*
9SS1|1|D1|G|1494
9SS1|1|D1|U|1495
9SS1|1|D1|C|1496

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain F1

Translation initiation factor IF-1

Chain F3

Translation initiation factor IF-3