IL_9SS1_059

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS1_059 not in the Motif Atlas

Geometric match to IL_9E6Q_055

Geometric discrepancy: 0.3063

The information below is about IL_9E6Q_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

9SS1|1|D1|U|1440
9SS1|1|D1|A|1441
9SS1|1|D1|G|1442
*
9SS1|1|D1|C|1460
9SS1|1|D1|G|1461

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AS

Small ribosomal subunit protein bS20