IL_9SS2_020

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS2_020 not in the Motif Atlas

Geometric match to IL_8B0X_019

Geometric discrepancy: 0.1303

The information below is about IL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9SS2|1|D1|U|409
9SS2|1|D1|G|410
9SS2|1|D1|A|411
9SS2|1|D1|A|412
9SS2|1|D1|G|413
9SS2|1|D1|A|414
9SS2|1|D1|A|415
9SS2|1|D1|G|416
*
9SS2|1|D1|U|427
9SS2|1|D1|G|428
9SS2|1|D1|U|429
9SS2|1|D1|A|430
9SS2|1|D1|A|431
9SS2|1|D1|A|432
9SS2|1|D1|G|433

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS4