IL_9SS2_041

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

9SS2|1|D1|C|934, 9SS2|1|D1|U|1381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS2_041 not in the Motif Atlas

Homologous match to IL_6CZR_410

Geometric discrepancy: 0.3722

The information below is about IL_6CZR_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

9SS2|1|D1|G|933
9SS2|1|D1|C|934
9SS2|1|D1|A|935
*
9SS2|1|D1|U|1380
9SS2|1|D1|U|1381
9SS2|1|D1|C|1382
9SS2|1|D1|C|1383
9SS2|1|D1|C|1384

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AF

Small ribosomal subunit protein uS7

Chain AH

Small ribosomal subunit protein uS9