IL_9SS2_048

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

9SS2|1|D1|C|1200, 9SS2|1|D1|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS2_048 not in the Motif Atlas

Homologous match to IL_6CZR_155

Geometric discrepancy: 0.2153

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9SS2|1|D1|G|1057
9SS2|1|D1|G|1058
*
9SS2|1|D1|U|1199
9SS2|1|D1|C|1200
9SS2|1|D1|A|1201
9SS2|1|D1|U|1202
9SS2|1|D1|C|1203

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AB

Small ribosomal subunit protein uS3

Chain AI

Small ribosomal subunit protein uS10

Chain AM

Small ribosomal subunit protein uS14