IL_9SS2_063

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS2_063 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.3188

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

9SS2|1|D1|G|1416
9SS2|1|D1|G|1417
9SS2|1|D1|A|1418
9SS2|1|D1|G|1419
*
9SS2|1|D1|U|1481
9SS2|1|D1|G|1482
9SS2|1|D1|A|1483
9SS2|1|D1|C|1484

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains