IL_9SS4_007

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_007 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0702

The information below is about IL_8B0X_071

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9SS4|1|D2|C|239
9SS4|1|D2|C|240
9SS4|1|D2|A|241
9SS4|1|D2|G|242
9SS4|1|D2|U|243
9SS4|1|D2|A|244
9SS4|1|D2|G|245
*
9SS4|1|D2|C|253
9SS4|1|D2|G|254
9SS4|1|D2|A|255
9SS4|1|D2|A|256
9SS4|1|D2|C|257
9SS4|1|D2|G|258

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B8

Large ribosomal subunit protein bL35

Chain BO

Large ribosomal subunit protein uL15