IL_9SS4_012

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_012 not in the Motif Atlas

Geometric match to IL_8B0X_076

Geometric discrepancy: 0.0854

The information below is about IL_8B0X_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

9SS4|1|D2|G|536
9SS4|1|D2|G|537
9SS4|1|D2|A|538
9SS4|1|D2|G|539
*
9SS4|1|D2|U|554
9SS4|1|D2|G|555
9SS4|1|D2|A|556
9SS4|1|D2|C|557

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BM

Large ribosomal subunit protein uL13

Chain BT

Large ribosomal subunit protein bL20