3D structure

PDB id
9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UUAAC*GGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9SS4_014 not in the Motif Atlas
Homologous match to IL_7A0S_013
Geometric discrepancy: 0.1935
The information below is about IL_7A0S_013
Detailed Annotation
AAA cross-strand stack
Broad Annotation
AAA cross-strand stack
Motif group
IL_66798.3
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
7

Unit IDs

9SS4|1|D2|U|606
9SS4|1|D2|U|607
9SS4|1|D2|A|608
9SS4|1|D2|A|609
9SS4|1|D2|C|610
*
9SS4|1|D2|G|618
9SS4|1|D2|G|619
9SS4|1|D2|G|620
9SS4|1|D2|A|621
9SS4|1|D2|G|622

Current chains

Chain D2
23S Ribosomal RNA

Nearby chains

Chain BD
Large ribosomal subunit protein uL4
Chain BO
Large ribosomal subunit protein uL15

Coloring options:


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