IL_9SS4_019

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_019 not in the Motif Atlas

Geometric match to IL_8GLP_059

Geometric discrepancy: 0.1112

The information below is about IL_8GLP_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9SS4|1|D2|U|703
9SS4|1|D2|G|704
9SS4|1|D2|A|705
9SS4|1|D2|A|706
9SS4|1|D2|G|707
*
9SS4|1|D2|U|724
9SS4|1|D2|G|725
9SS4|1|D2|G|726
9SS4|1|D2|A|727
9SS4|1|D2|G|728

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2