IL_9SS4_028
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS4_028 not in the Motif Atlas
- Homologous match to IL_7A0S_029
- Geometric discrepancy: 0.2132
- The information below is about IL_7A0S_029
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.2
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
9SS4|1|D2|G|864
9SS4|1|D2|C|865
9SS4|1|D2|A|866
9SS4|1|D2|C|867
9SS4|1|D2|U|868
*
9SS4|1|D2|A|909
9SS4|1|D2|A|910
9SS4|1|D2|A|911
9SS4|1|D2|C|912
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain BP
- 50S ribosomal protein L16
- Chain D3
- 5S ribosomal RNA; 5S rRNA
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