IL_9SS4_035

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9SS4|1|D2|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_035 not in the Motif Atlas

Homologous match to IL_7A0S_035

Geometric discrepancy: 0.2994

The information below is about IL_7A0S_035

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

9SS4|1|D2|G|1011
9SS4|1|D2|U|1012
9SS4|1|D2|C|1013
*
9SS4|1|D2|G|1149
9SS4|1|D2|C|1150

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BM

Large ribosomal subunit protein uL13

Chain BT

Large ribosomal subunit protein bL20