IL_9SS4_064
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAACUAGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS4_064 not in the Motif Atlas
- Geometric match to IL_8B0X_180
- Geometric discrepancy: 0.0773
- The information below is about IL_8B0X_180
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.2
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 11
Unit IDs
9SS4|1|D2|G|1666
9SS4|1|D2|G|1667
9SS4|1|D2|A|1668
9SS4|1|D2|A|1669
9SS4|1|D2|C|1670
9SS4|1|D2|U|1671
9SS4|1|D2|A|1672
9SS4|1|D2|G|1673
9SS4|1|D2|G|1674
*
9SS4|1|D2|C|1990
9SS4|1|D2|U|1991
9SS4|1|D2|G|1992
9SS4|1|D2|U|1993
9SS4|1|D2|C|1994
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain BC
- 50S ribosomal protein L3
- Chain BN
- Large ribosomal subunit protein uL14
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