IL_9SS4_072
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GC*GCAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS4_072 not in the Motif Atlas
- Homologous match to IL_7A0S_071
- Geometric discrepancy: 0.3701
- The information below is about IL_7A0S_071
- Detailed Annotation
- Bulged stacked bases
- Broad Annotation
- Bulged stacked bases
- Motif group
- IL_24886.3
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 13
Unit IDs
9SS4|1|D2|G|1933
9SS4|1|D2|C|1934
*
9SS4|1|D2|G|1964
9SS4|1|D2|C|1965
9SS4|1|D2|A|1966
9SS4|1|D2|C|1967
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: