IL_9SS4_073

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

9SS4|1|D2|A|1938, 9SS4|1|D2|U|1944, 9SS4|1|D2|U|1963

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_073 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.263

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

9SS4|1|D2|C|1934
9SS4|1|D2|G|1935
9SS4|1|D2|A|1936
9SS4|1|D2|A|1937
9SS4|1|D2|A|1938
9SS4|1|D2|U|1939
9SS4|1|D2|U|1940
9SS4|1|D2|C|1941
9SS4|1|D2|C|1942
9SS4|1|D2|U|1943
9SS4|1|D2|U|1944
9SS4|1|D2|G|1945
*
9SS4|1|D2|C|1961
9SS4|1|D2|C|1962
9SS4|1|D2|U|1963
9SS4|1|D2|G|1964

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains