IL_9SS4_078

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

9SS4|1|D2|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_078 not in the Motif Atlas

Homologous match to IL_7A0S_077

Geometric discrepancy: 0.1151

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9SS4|1|D2|U|2081
9SS4|1|D2|A|2082
9SS4|1|D2|G|2083
*
9SS4|1|D2|U|2236
9SS4|1|D2|G|2237
9SS4|1|D2|G|2238
9SS4|1|D2|G|2239

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B1

Large ribosomal subunit protein bL28

Chain BB

Large ribosomal subunit protein uL2