IL_9SS4_100

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UU*ACUG

Length

6 nucleotides

Bulged bases

9SS4|1|D2|C|2712, 9SS4|1|D2|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_100 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.2535

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

9SS4|1|D2|U|2695
9SS4|1|D2|U|2696
*
9SS4|1|D2|A|2711
9SS4|1|D2|C|2712
9SS4|1|D2|U|2713
9SS4|1|D2|G|2714

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BQ

Large ribosomal subunit protein bL17

Chain BS

Large ribosomal subunit protein bL19