IL_9SS4_104

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_104 not in the Motif Atlas

Geometric match to IL_8B0X_169

Geometric discrepancy: 0.0561

The information below is about IL_8B0X_169

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.3

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

9SS4|1|D2|G|2843
9SS4|1|D2|G|2844
9SS4|1|D2|U|2845
9SS4|1|D2|G|2846
*
9SS4|1|D2|C|2870
9SS4|1|D2|U|2871
9SS4|1|D2|A|2872
9SS4|1|D2|A|2873
9SS4|1|D2|C|2874

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BQ

Large ribosomal subunit protein bL17

Chain BS

Large ribosomal subunit protein bL19