IL_9SS4_105
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGUAAG*UUGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS4_105 not in the Motif Atlas
- Homologous match to IL_7A0S_101
- Geometric discrepancy: 0.3653
- The information below is about IL_7A0S_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48489.2
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
9SS4|1|D2|U|2847
9SS4|1|D2|G|2848
9SS4|1|D2|U|2849
9SS4|1|D2|A|2850
9SS4|1|D2|A|2851
9SS4|1|D2|G|2852
*
9SS4|1|D2|U|2865
9SS4|1|D2|U|2866
9SS4|1|D2|G|2867
9SS4|1|D2|A|2868
9SS4|1|D2|G|2869
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain BQ
- Large ribosomal subunit protein bL17
- Chain BS
- Large ribosomal subunit protein bL19
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