IL_9SS5_001
3D structure
- PDB id
- 9SS5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit in rimM-KO with RsfS (+H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS5_001 not in the Motif Atlas
- Homologous match to IL_7A0S_001
- Geometric discrepancy: 0.0924
- The information below is about IL_7A0S_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.2
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9SS5|1|D2|G|24
9SS5|1|D2|U|25
9SS5|1|D2|G|26
9SS5|1|D2|G|27
9SS5|1|D2|A|28
9SS5|1|D2|U|29
9SS5|1|D2|G|30
*
9SS5|1|D2|C|510
9SS5|1|D2|U|511
9SS5|1|D2|G|512
9SS5|1|D2|A|513
9SS5|1|D2|A|514
9SS5|1|D2|A|515
9SS5|1|D2|C|516
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B5
- Large ribosomal subunit protein bL32
- Chain BT
- Large ribosomal subunit protein bL20
- Chain BV
- Large ribosomal subunit protein uL22
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