IL_9SS5_006

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS5_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.0825

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9SS5|1|D2|G|188
9SS5|1|D2|G|189
9SS5|1|D2|A|190
9SS5|1|D2|A|191
9SS5|1|D2|C|192
9SS5|1|D2|U|193
9SS5|1|D2|G|194
*
9SS5|1|D2|C|201
9SS5|1|D2|U|202
9SS5|1|D2|A|203
9SS5|1|D2|A|204
9SS5|1|D2|G|205
9SS5|1|D2|U|206
9SS5|1|D2|A|207
9SS5|1|D2|C|208

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B1

Large ribosomal subunit protein bL28

Chain BO

Large ribosomal subunit protein uL15