IL_9SS5_011

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

9SS5|1|D2|A|504, 9SS5|1|D2|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS5_011 not in the Motif Atlas

Geometric match to IL_8B0X_075

Geometric discrepancy: 0.0648

The information below is about IL_8B0X_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

10

Unit IDs

9SS5|1|D2|G|481
9SS5|1|D2|A|482
9SS5|1|D2|A|483
9SS5|1|D2|C|484
*
9SS5|1|D2|G|496
9SS5|1|D2|A|497
9SS5|1|D2|G|498
9SS5|1|D2|U|499
9SS5|1|D2|G|500
9SS5|1|D2|A|501
9SS5|1|D2|A|502
9SS5|1|D2|A|503
9SS5|1|D2|A|504
9SS5|1|D2|A|505
9SS5|1|D2|G|506
9SS5|1|D2|A|507
9SS5|1|D2|A|508
9SS5|1|D2|C|509

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BV

Large ribosomal subunit protein uL22

Chain BX

Large ribosomal subunit protein uL24