IL_9SS5_021

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9SS5|1|D2|G|776, 9SS5|1|D2|A|788, 9SS5|1|D2|A|789, 9SS5|1|D2|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS5_021 not in the Motif Atlas

Geometric match to IL_9E6Q_032

Geometric discrepancy: 0.0548

The information below is about IL_9E6Q_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.2

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

9SS5|1|D2|G|775
9SS5|1|D2|G|776
9SS5|1|D2|G|777
*
9SS5|1|D2|C|787
9SS5|1|D2|A|788
9SS5|1|D2|A|789
9SS5|1|D2|U|790
9SS5|1|D2|C|791

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B7

Large ribosomal subunit protein bL34

Chain BB

Large ribosomal subunit protein uL2

Chain BV

Large ribosomal subunit protein uL22