IL_9SS5_038

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9SS5|1|D2|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS5_038 not in the Motif Atlas

Homologous match to IL_7A0S_038

Geometric discrepancy: 0.2241

The information below is about IL_7A0S_038

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

9SS5|1|D2|G|1031
9SS5|1|D2|A|1032
9SS5|1|D2|U|1033
9SS5|1|D2|G|1034
*
9SS5|1|D2|C|1121
9SS5|1|D2|G|1122
9SS5|1|D2|C|1123

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B9

Large ribosomal subunit protein bL36A

Chain BP

50S ribosomal protein L16

Chain D3

5S ribosomal RNA; 5S rRNA