IL_9SS5_098

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9SS5|1|D2|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS5_098 not in the Motif Atlas

Homologous match to IL_7A0S_093

Geometric discrepancy: 0.1321

The information below is about IL_7A0S_093

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9SS5|1|D2|C|2636
9SS5|1|D2|U|2637
9SS5|1|D2|G|2638
9SS5|1|D2|A|2639
9SS5|1|D2|G|2640
*
9SS5|1|D2|C|2774
9SS5|1|D2|G|2775
9SS5|1|D2|A|2776
9SS5|1|D2|G|2777
9SS5|1|D2|A|2778
9SS5|1|D2|U|2779
9SS5|1|D2|G|2780
9SS5|1|D2|A|2781
9SS5|1|D2|G|2782

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L3

Chain BM

Large ribosomal subunit protein uL13