IL_9SS6_003

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUAAC*GGG

Length

9 nucleotides

Bulged bases

9SS6|1|D1|C|48, 9SS6|1|D1|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_003 not in the Motif Atlas

Geometric match to IL_8B0X_003

Geometric discrepancy: 0.0779

The information below is about IL_8B0X_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9SS6|1|D1|C|47
9SS6|1|D1|C|48
9SS6|1|D1|U|49
9SS6|1|D1|A|50
9SS6|1|D1|A|51
9SS6|1|D1|C|52
*
9SS6|1|D1|G|359
9SS6|1|D1|G|360
9SS6|1|D1|G|361

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AK

Small ribosomal subunit protein uS12