IL_9SS6_014
3D structure
- PDB id
- 9SS6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from RimM-KO
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 9SS6|1|D1|U|244, 9SS6|1|D1|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS6_014 not in the Motif Atlas
- Homologous match to IL_6CZR_123
- Geometric discrepancy: 0.207
- The information below is about IL_6CZR_123
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.2
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9SS6|1|D1|G|242
9SS6|1|D1|A|243
9SS6|1|D1|U|244
9SS6|1|D1|U|245
9SS6|1|D1|A|246
9SS6|1|D1|G|247
*
9SS6|1|D1|C|277
9SS6|1|D1|G|278
9SS6|1|D1|A|279
9SS6|1|D1|C|280
9SS6|1|D1|G|281
9SS6|1|D1|A|282
9SS6|1|D1|U|283
9SS6|1|D1|C|284
Current chains
- Chain D1
- 16S Ribosomal RNA
Nearby chains
- Chain AK
- Small ribosomal subunit protein uS12
- Chain AP
- Small ribosomal subunit protein uS17
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