IL_9SS6_020

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_020 not in the Motif Atlas

Geometric match to IL_8B0X_019

Geometric discrepancy: 0.1301

The information below is about IL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9SS6|1|D1|U|409
9SS6|1|D1|G|410
9SS6|1|D1|A|411
9SS6|1|D1|A|412
9SS6|1|D1|G|413
9SS6|1|D1|A|414
9SS6|1|D1|A|415
9SS6|1|D1|G|416
*
9SS6|1|D1|U|427
9SS6|1|D1|G|428
9SS6|1|D1|U|429
9SS6|1|D1|A|430
9SS6|1|D1|A|431
9SS6|1|D1|A|432
9SS6|1|D1|G|433

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS4