IL_9SS6_023

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_023 not in the Motif Atlas

Homologous match to IL_6CZR_406

Geometric discrepancy: 0.5933

The information below is about IL_6CZR_406

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_26564.1

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9SS6|1|D1|G|450
9SS6|1|D1|A|451
9SS6|1|D1|A|452
9SS6|1|D1|G|453
9SS6|1|D1|G|454
9SS6|1|D1|G|455
*
9SS6|1|D1|C|477
9SS6|1|D1|A|478
9SS6|1|D1|U|479
9SS6|1|D1|U|480
9SS6|1|D1|G|481
9SS6|1|D1|A|482
9SS6|1|D1|C|483

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AO

Small ribosomal subunit protein bS16