IL_9SS6_026

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9SS6|1|D1|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_026 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.12

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9SS6|1|D1|C|569
9SS6|1|D1|G|570
9SS6|1|D1|U|571
9SS6|1|D1|A|572
9SS6|1|D1|A|573
9SS6|1|D1|A|574
9SS6|1|D1|G|575
*
9SS6|1|D1|C|880
9SS6|1|D1|G|881

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AK

Small ribosomal subunit protein uS12

Chain AP

Small ribosomal subunit protein uS17