IL_9SS6_036

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_036 not in the Motif Atlas

Homologous match to IL_6CZR_144

Geometric discrepancy: 0.1252

The information below is about IL_6CZR_144

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

9SS6|1|D1|G|774
9SS6|1|D1|G|775
9SS6|1|D1|G|776
9SS6|1|D1|A|777
9SS6|1|D1|G|778
*
9SS6|1|D1|U|804
9SS6|1|D1|C|805

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AJ

Small ribosomal subunit protein uS11

Chain BB

Large ribosomal subunit protein uL2

Chain D2

Large subunit ribosomal RNA; LSU rRNA