IL_9SS6_037

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_037 not in the Motif Atlas

Homologous match to IL_6CZR_145

Geometric discrepancy: 0.1156

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9SS6|1|D1|C|779
9SS6|1|D1|A|780
9SS6|1|D1|A|781
9SS6|1|D1|A|782
9SS6|1|D1|C|783
*
9SS6|1|D1|G|799
9SS6|1|D1|G|800
9SS6|1|D1|U|801
9SS6|1|D1|A|802
9SS6|1|D1|G|803

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AJ

Small ribosomal subunit protein uS11

Chain AT

Small ribosomal subunit protein bS21

Chain D2

Large subunit ribosomal RNA; LSU rRNA