IL_9SS6_050
3D structure
- PDB id
- 9SS6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from RimM-KO
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUUGC*GAACUC
- Length
- 11 nucleotides
- Bulged bases
- 9SS6|1|D1|U|1126
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS6_050 not in the Motif Atlas
- Geometric match to IL_8B0X_050
- Geometric discrepancy: 0.1778
- The information below is about IL_8B0X_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38603.1
- Basepair signature
- cWW-cWS-L-R-L-R-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9SS6|1|D1|G|1124
9SS6|1|D1|U|1125
9SS6|1|D1|U|1126
9SS6|1|D1|G|1127
9SS6|1|D1|C|1128
*
9SS6|1|D1|G|1144
9SS6|1|D1|A|1145
9SS6|1|D1|A|1146
9SS6|1|D1|C|1147
9SS6|1|D1|U|1148
9SS6|1|D1|C|1149
Current chains
- Chain D1
- 16S Ribosomal RNA
Nearby chains
- Chain AH
- Small ribosomal subunit protein uS9
- Chain AI
- Small ribosomal subunit protein uS10
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